Structure analysis

In the final stages of the protein model building and before the deposition at the RCSB or EBI, the model is validated and the analysis of the structure is carried out. For the structure validation, analysis and visualization there are several tools available in the web as well as in the software packages installed in our Linux computing system.

Validation and analysis tools:

A short guide how to validate an existing PDB-entry is provided here.

Visualisation:

Important servers for structure validation:

Server for analysis of protein interfaces:

Contact persons:

Ari-Pekka Kvist, PhD, Windows and Linux computing environment
Faculty of Biochemistry and Molecular Medicine F126B
University of Oulu
PO Box 5400, 90014 University of Oulu, Finland
tel. +358-(0)294 481165
e-mail: ari-pekka.kvist (at) oulu.fi

Tiila-Riikka Kiema, PhD
Faculty of Biochemistry and Molecular Medicine F217
University of Oulu
PO Box 5400, 90014 University of Oulu, Finland
tel. +358-(0)294 481179
e-mail: tiila.kiema (at) oulu.fi

Last updated: 31/5/2017