PUBLICATIONS OF JAAKKO SOINI

Jaakko Soini, Christina Saarimaa, Arne Matzen, Peter Neubauer. 2005. Physiological responses of E. coli to glucose and oxygen shifts in fed-batch fermentations. Journal of Biotechnology. Vol 118 Suppl 1, August 2005. Abstracts of the 12th European Congress on Biotechnology (ECB 12), August 21-24, 2005, Copenhagen, Denmark. P. S46. Poster abstract.

Peter Neubauer, Jaakko Soini, Christina Saarimaa. 2005. Gene regulation and carbon metabolism in E. coli K-12 in response to anaerobiosis. 3rd Oulu Summer School in Bioprocess Engineering (OSSiBE) "From Molecular Physiology To System Biology News About Cellular Regulatory Networks", 6-9 June 2005, University of Oulu, Oulu, Finland. P. 24. Presentation abstract.

Jaakko Soini, Christina Falschlehner, Christina Saarimaa, Janne Sandqvist and Peter Neubauer. 2005. The transcriptional response of Escherichia coli W3110 variants for transient changes in the microenvironment during high-cell density cultivations. 3rd Oulu Summer School in Bioprocess Engineering (OSSiBE) "From Molecular Physiology To System Biology News About Cellular Regulatory Networks", 6-9 June 2005, University of Oulu, Oulu, Finland. P. 12. Presentation abstract.

Jaakko Soini, Christina Falschlehner, Christina Mayer, Daniela Böhm, Stefan Weinel, Johanna Panula, Antti Vasala and Peter Neubauer. 2005. Transient increase of ATP as a response to temperature up-shift in Eschericia coli. Microbial Cell Factories 2005, 4:9 doi:10.1186/1475-2859-4-9. This article is available from: http://www.microbialcellfactories.com/content/4/1/9

Soini, J. 2004. Comparative physiological characterization of large-scale and small-scale recombinant Escherichia coli fermentations. Diploma thesis (Bioprocess Engineering). University of Oulu, Department of Process and Environmental Engineering, Bioprocess Engineering Laboratory. 81 p. + 21 app.

Soini, J. 2004. Quantitative analysis of gene expression in recombinant bioprocesses. Oral presentation and abstract at the 2nd Oulu Summer School in Bioprocess Engineering and NeoBio Seminar 'Recombinant Protein Production in Different Host Systems - Advanced Tools for Optimisation and Monitoring', 9-11 June 2004, Oulanka Research Station, Kuusamo, Finland.

Pulkkinen P, Soini J, Falschlehner C, Hektor A, Neubauer P. 2004. Physiological responses of E. coli to sudden down-shift of carbon or oxygen in glucose-limited chemostats. ESBES-5 (European Symposium on Biochemical Engineering Science), 8.-11.9.2004, Stuttgart, Germany, p. 158.

Soini J, Falschlehner C, Pulkkinen P, Matzen A, Neubauer P. 2004. Physiological responses of E. coli to glucose and oxygen shifts in chemostat and fed-batch fermentations. The 3rd Recombinant Protein Production Meeting. A comparative view on host physiology, Nov. 11-14. Tavira, Portugal, p. 143.

Bollok M, Soini J, Pulkkinen P, Falschlehner C, Neubauer P. 2004. RNA monitoring for analysis of bottlenecks in recombinant expression systems. The ESBES-5 (European Symposium on Biochemical Engineering Science), 8.-11.9.2004, Stuttgart, Germany. Poster, p. 157. Poster abstract.

P. Neubauer*, D. Böhm*, A. Breitenstein**, C. Falschlehner*, S. Huhtamella*, R. Kuivila*, M. Leinonen*, C. Mayer*, L. Myllykoski*, T. Nieminen*, J. Rautio*, T. Rosilainen*, C. Saarimaa*, J. Soini*, A. Tilsala-Timisjärvi**. 2003. Quantitative Analysis of Microorganisms and their Activities in Bioprocesses, Food and Environment. *Department of Process and Environmental Engineering and Biocenter Oulu, University of Oulu, Finland. **Scanbec Oy, Oulu, Finland. Poster, presented at the Lippay János – Ormos Imre – Vas Károly Scientific Conference, 6-7 November 2003, Budapest, Hungary.

Soini, J., Falschlehner, C. & Böhm, D. 2003. Quantitative RNA analysis for the state analysis of recombinant E. coli fermentations. Oral presentation and abstract at the Biocenter Oulu Workshop 'Comprehensive Analytical Techniques for Bioprocess and Environmental Analysis', 26-27 May 2003, Bothnian Bay Research Station, Hailuoto, Finland.