Publications and Downloads



Algorithm-based Combination and Analysis of Multidimensional Video and Open Data (ABCdata) (Final Report)

Journals and Conferences


Bayramoglu N, Kannala J & Heikkilä J (2015)
Human epithelial type 2 cell classification with convolutional neural networks.
Proc. IEEE International Conference on Bioinformatics & Bioengineering (BIBE), Belgrade, Serbia, accepted. (Project page)

Bayramoglu N, Kannala J, Akerfelt M, Kaakinen M, Eklund L, Nees M, & Heikkilä J (2015)
A novel feature descriptor based on microscopy image statistics.
Proc. International Conference on Image Processing (ICIP 2015), Quebec City, Canada, accepted. (Project page: paper & data)

Åkerfelt M, Bayramoglu N, Robinson S, Toriseva M, Schukov H-P, Härmä V, Virtanen J, Kaakinen M, Eklund L, Kannala J, Heikkilä J & Nees M (2015)
Automated tracking of tumor-stroma morphology in microtissues identifies targets within the tumor microenvironment for therapeutic intervention.
Oncotarget, accepted. (Project page: paper & supplementary material)


Akram S U, Kannala J, Kaakinen M, Eklund L & Heikkilä J (2014)
Segmentation of cells from spinning disk confocal images using a multi-stage approach. (Paper)
Asian Conference on Computer Vision (ACCV 2014) .

Bayramoglu N, Kaakinen M, Eklund L, Åkerfelt M, Nees M, Kannala J & Heikkilä J. (2014)
Detection of tumor cell spheroids from co-cultures using phase contrast images and machine learning approach.
Proc. 22nd International Conference on Pattern Recognition (ICPR), Stockholm, Sweden, 3345-3350. (Project page: paper & data)

Kaakinen M, Huttunen S, Paavolainen L, Marjomäki V, Heikkilä J & Eklund L (2014)
Automatic detection and analysis of cell motility in phase-contrast time-lapse images using a combination of maximally stable extremal regions and Kalman filter approaches.
Journal of Microscopy, January, 253(1):65-78.  (Project pagePaper)


Last updated: 29.10.2020